rs236649469 SNP Detail

Summary

• ID
  rs236649469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135711004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGTTG CTGCCACTAA
  GCAGGATCAG CACTGTTAAT AATTATGTAA GATATGCTTA CAGACTTGGT ACACTTTCAG
  GCTTTATGGT TAATAAAGCT TACAAAGCTT TATTTAATAA TATTTATTTA TTTAATATTT
  AATAATATTT ATTTATTTAA TATTTAATAA TATTAATATT TAATAAAGCT TACAAAGCTT
  R
  CAAAAGGCAA AGGAGTGGGC CCTTTTACTG AACAAAAACA CAACAATAAG AGAACAGATA
  CAAGATTAAA ATTAAACAAA ATTTCCCAAA GTAATTGCCA ACTACAAGGC CAGTTATACA
  TTTTAAGCAA CTTTTCAGAA AACTTATTCT TGAAAAGAAT ATTTCTCTTG AACATCAGTG
  GAGGAGAAGA TTCAAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	MOLF/EiJ	QSi3/Ianm	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss359848601	MGP_WTSI_3_135668207	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	MOLF/EiJ	QSi3/Ianm	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs236649469					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359848601	MGP_WTSI_3_135668207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135711004 () rs orientation: forward

Symbol	Name	Function Class
Rr585801	regulatory region 585801	1876 bp proximal