rs236649239 SNP Detail

Summary

• ID
  rs236649239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71698462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT AGAAACAAAA AGGTAAGATG
  R
  GGGGACAGGG AGAAGGAAGG AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320340940	CHEV_2_71706175	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236649239					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71698462 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	566 bp upstream
Gm75575	predicted gene, 75575	362 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	1880 bp distal
Rr558853	regulatory region 558853	577 bp distal
Rr558854	regulatory region 558854	151 bp distal
Tssr18292	transcription start site region 18292	1986 bp downstream
Tssr18293	transcription start site region 18293	359 bp downstream
Tssr18294	transcription start site region 18294	389 bp upstream
Tssr18295	transcription start site region 18295	396 bp upstream
Tssr24499	transcription start site region 24499	534 bp upstream
Tssr24500	transcription start site region 24500	188 bp downstream