rs236642698 SNP Detail

Summary

• ID
  rs236642698
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76355083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGGGTAC CCTAAGCATA TAAAGGGTAG
  CCCTTTACTT TATTACACTG CAACCGTGAA AGGATCAAAT GGTGTTTCAG AAGTCAAGTG
  GACcagtgtt atccaacagg gcttcgtgaa acaatggaaa cctctgcgcc agagctcctc
  W
  acatggtcac tagctatgcg tggggtttgg ccacttgaaa tgtagctagc acaactgagc
  tcttaattac atttaaattt aattaaGTAA TAAGGAAACT TGGCTTCTTA AATTAGATAA
  TTAGGAACAA GAAGATCTGT CTGCTGTTGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170934	CHEV_4_76082750	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236642698					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76355083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			524 bp distal
Rr594099	regulatory region 594099			1720 bp proximal
Tssr42160	transcription start site region 42160			1050 bp upstream
Tssr42161	transcription start site region 42161			968 bp upstream