rs236607579 SNP Detail

Summary

• ID
  rs236607579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAAAAT ACAACCCCAC
  AAAATATCTC CCAAAACAAA TTAATTCCGG GTTTTGCTTA CATAGATACT TAAAGAAAGA
  AAAAAATTTT AAATGTCTAC AAAGTATCAA CTCTGATTTA AACTATCTTA TAGGAAAACT
  AGAACAACTG CCATACAGTA TCTAATGGCA TACACATGTA TCAAACAACT GCTTGCAAAA
  M
  TAATCCCGTG GGTGGGCACA CATATGTCAT CCCAGTTACC CAAAGGCTGG CATTGGAGAG
  TCTCAAATTC AAGGTCAGCC TGTGAAAATA GTGAGACCTT AGCTCAAAAA CTACTTAAAG
  GAAGCTTGGA ATATTCCTCA GAGGTATACA CTTGCCTAGC ATGTGCAAGA CCCTGGCTTA
  GTCCTCCAAT CCTGCCTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320429656	CHEV_2_101478883	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236607579					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469071 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	885 bp proximal
Tssr25364	transcription start site region 25364	1376 bp downstream
Tssr25365	transcription start site region 25365	1500 bp downstream