rs236582612 SNP Detail

Summary

• ID
  rs236582612
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141978973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATACAC ATATTTGCAT
  CTAGTGATTT AAGTTTACCT AATCTGGTGA TCATAACTTA CTAGGAATGT AGAAAAACCA
  TTACATAGCA AATTAGGTCA CCTACAAAAA CACAGGTATA TATTTTTAAA CTATTACTAT
  TAAATTTACA AAGGTTTAAA AATACTCATC TAACCACTTA TTATTTATAT ATAATATGAA
  K
  CTTTCACAAA TAAAATTTTA ATACATAAAT ATTGAGGCTG TACGATGTAG CTCAGTGGTA
  CGGCATATGC CTGGGATGTA TGACGCCCAG GGACTCATCC CTAGCTCTTC AAACAAACAA
  AAGTGAATTC AATATAGGTT TAAAAAAATC CCAATTCTGA TAAATAACAA GAAAAAACTC
  CATTTTTACG TACGTCCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320999828	CHEV_3_141936176	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236582612					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141978973 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	1889 bp upstream
Rr586404	regulatory region 586404	1288 bp proximal
Rr586405	regulatory region 586405	1892 bp proximal