rs236557552 SNP Detail

Summary

• ID
  rs236557552
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105515081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGACACT TCAAAGTAGT
  AATATGTTGT TAGATTTCTA TTCTGACACA ACCTTTTAGT GAGGACCCTT GAAATTTTCC
  CACTACTATA TGCCAAGGTG AGTGATCAAT TCCCAGTCTT CCATATGAGT TGTGAATATT
  TTTGTCCTTT TGTTACTTTT AAATTATTTT TTAATTATAT CTTATATTTA AAATAGACTT
  W
  ATACATCTTA ATATATGTAG AAATATAATT TGTATATAAT ATATAAATTT ATTTTATATA
  TTTATATGTA TATAATATGT ACATAAATAT ATAAACTTAC GATATATTAC ATGCATATTT
  TATAAATATA TTTATGTACT TTAATAACAT ATGTTATATA TCTTGTATTT AAACATTTTA
  GTACAGGAAC AGTTAAGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss362716601	MGP_WTSI_4_105330489	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs236557552					SNP	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362716601	MGP_WTSI_4_105330489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105515081 () rs orientation: forward

Symbol	Name	Function Class
Rr596636	regulatory region 596636	1310 bp distal
Rr596637	regulatory region 596637	641 bp proximal