rs236518902 SNP Detail

Summary

• ID
  rs236518902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148694423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCGGTG TGCGAGCGCG
  CCCCGGGGGA GGGCCAATCT GGCGCGGGGA GCCGCGCGGG GACACGGGCG CGAAGGAAGG
  GCCGAGGCGA CCGGCGCGGG GTGCTCCTGC TGGCTGAGCG CGCGCGGGGA GGCGGCGGCT
  GGCGGGCCGG ACACGGCGCC GCGCGGCTCT TCGGCGTGTC CTCCGACTCG AGTCTCCACC
  R
  CCGTCAGCCG CCGAGTCCAG CCAAGCAGCC CAGCGGCCCG GGCGGCTGCC GGGGGGCTAA
  GTCAACATCT TCCCGCAGTT TCCCACACGC CGTTCCGCGA CCCTGGGGGC TTTGCCCACA
  CACGCGCGCG CCTACCGCTG CACGCTCCCT CCGGAGCCGG AAAAAAAAAT CAAAAATCAA
  AACCAAAAGA TGCGGGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360182861	MGP_WTSI_3_148651751	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236518902					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360182861	MGP_WTSI_3_148651751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148694423 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adgrl2	adhesion G protein-coupled receptor L2			Intron
				mRNA-UTR
Gm43573	predicted gene 43573			within coordinates
Rr587240	regulatory region 587240			1143 bp distal
Rr587241	regulatory region 587241			within coordinates
Rr587242	regulatory region 587242			530 bp proximal
Rr587243	regulatory region 587243			1758 bp proximal
Tssr36077	transcription start site region 36077			307 bp downstream
Tssr36078	transcription start site region 36078			315 bp downstream
Tssr36079	transcription start site region 36079			561 bp downstream
Tssr36080	transcription start site region 36080			591 bp downstream
Tssr36081	transcription start site region 36081			618 bp downstream
Tssr36082	transcription start site region 36082			656 bp downstream
Tssr36083	transcription start site region 36083			726 bp downstream
Tssr36084	transcription start site region 36084			745 bp downstream
Tssr36085	transcription start site region 36085			769 bp downstream
Tssr36086	transcription start site region 36086			925 bp downstream
Tssr36087	transcription start site region 36087			1199 bp downstream
Tssr36088	transcription start site region 36088			1313 bp downstream
Tssr36089	transcription start site region 36089			1732 bp downstream
Tssr36090	transcription start site region 36090			1782 bp downstream