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rs236492380 SNP Detail
Summary
  • ID
    rs236492380
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:131872538 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACACCCGGGT TTGTTCCCAA
    AAGGGTTTGA GTTGCCAAAG GGCTAAGTGG GCCCCTTCGA CTCGGCAGGC CGGCAGACGT
    GACGGCAATG TGAAGGAAGT CAAGTTTCTT TGTCCATTCC TCACCTCCTC CTCCTCTCCA
    TCCTTAGACC TCCGAGGAAC TCTAGTGTAT AGGAGGGAGC ACCCAGCTAC GGATTCTATA
    Y
    CCTCTAACCA TAATTCTTCG TTTACATATG CCCGACCTTG CAGTTGGTCC CCAAACCAAA
    GGGGAAGGGA ATCTAACGGT TAAAGAAAGG GCAGCCAAGC CTCCAAAGTG CATCCCATCT
    GCCTGGAAGC CAGATATTCT CTTTTAAACT CATTGTTTGG ATCTTGGAAT GTGTCTCCCA
    TAGAAACAAT GTTATAAACG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss355696551 MGP_WTSI_2_131856354 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236492380 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss355696551 MGP_WTSI_2_131856354 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:131872538 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12299 CpG island 12299 96 bp distal
Gm31179 predicted gene, 31179 within coordinates
Gm75461 predicted gene, 75461 within coordinates
Rassf2 Ras association (RalGDS/AF-6) domain family member 2 202 bp upstream
Rr367316 regulatory region 367316 1142 bp downstream
Rr397324 regulatory region 397324 413 bp downstream
Rr565380 regulatory region 565380 within coordinates
Rr565381 regulatory region 565381 553 bp distal
Tssr20294 transcription start site region 20294 632 bp downstream
Tssr26436 transcription start site region 26436 1434 bp upstream
Tssr26437 transcription start site region 26437 1413 bp upstream
Tssr26438 transcription start site region 26438 814 bp upstream
Tssr26439 transcription start site region 26439 805 bp upstream
Tssr26440 transcription start site region 26440 796 bp upstream
Tssr26441 transcription start site region 26441 774 bp upstream
Tssr26442 transcription start site region 26442 717 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory