rs236470773 SNP Detail

Summary

• ID
  rs236470773
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67421535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT AGAGAATTCT CCCCCCCCCC
  V
  CCCCCCAATA ACGAGGGAGG TTGTC                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PL/J	SJL/J	SPRET/EiJ	WSB/EiJ
ss916169788	MGP_WTSI_3_67514202	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PL/J	SJL/J	SPRET/EiJ	WSB/EiJ
rs236470773					SNP	A	A	A	A	A	A	A	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916169788	MGP_WTSI_3_67514202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67421535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	499 bp proximal
Gm40067	predicted gene, 40067	1047 bp upstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Intron
Rr577934	regulatory region 577934	953 bp distal
Rr577935	regulatory region 577935	1178 bp distal
Rr577936	regulatory region 577936	1311 bp proximal
Rr577937	regulatory region 577937	1350 bp proximal
Rr577938	regulatory region 577938	1448 bp proximal
Tssr33502	transcription start site region 33502	1266 bp downstream
Tssr33503	transcription start site region 33503	1285 bp downstream
Tssr33504	transcription start site region 33504	1424 bp downstream
Tssr33505	transcription start site region 33505	1461 bp downstream
Tssr33506	transcription start site region 33506	1502 bp downstream