rs236447347 SNP Detail

Summary

• ID
  rs236447347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151945718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGAGCA ACTTCTTGGT
  GCCCTGATTT GTGATCCCTT GGTCCCCTCT CAGGTCACCC AAGGCAGATA GCTGTGTGCT
  TCTGGGCCCT TAAAATGCCT GTCCCATTCA AAAGCAGAAT AACAGGGAAA GTTAGGTTCA
  GCACCTACAG CCACCCTTGC CCAGGAAAGA GCAGGGGCCT GGGTCTCCAC ACCCAAAGGG
  W
  TGCAGGATGG CTGGCTATTC TGGGTCCTCA GCAGGAACGT TCCCTGCTAC CGGAGTTTAC
  CTGATACCCC TCATTGGTGT CTCCTTTCTC TAGCACCTAC AGGGGTCACC TCTGCTCTGT
  TCCTAACAGA GTTTACAACA GGTTCAAGCC CCAGGCTCTT TTAGAATCTT ACTGTCCCCT
  TCCCTTAGAG CCTGGGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144602	MGP_WTSI_2_151929534	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236447347					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144602	MGP_WTSI_2_151929534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151945718 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	879 bp downstream
Cpgi12438	CpG island 12438	1210 bp proximal
Gm31475	predicted gene, 31475	634 bp upstream
Rr567286	regulatory region 567286	805 bp distal
Rr567287	regulatory region 567287	885 bp proximal
Rr567288	regulatory region 567288	1648 bp proximal
Rr567289	regulatory region 567289	1710 bp proximal
Rr567290	regulatory region 567290	1862 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	1718 bp upstream
Tssr20767	transcription start site region 20767	1004 bp upstream
Tssr20768	transcription start site region 20768	1116 bp upstream
Tssr20769	transcription start site region 20769	1924 bp upstream
Tssr26780	transcription start site region 26780	1569 bp downstream