rs236445529 SNP Detail

Summary

• ID
  rs236445529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100730798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTGTGGG AAGAGTGGCC AGAGGACACA
  ATCACAGGGA AGCCCATGGC TGAGGGGAGA GTGAGGATGA CTGGGCAGGG TGGGGGGCAT
  TAGCAGAGTC ACAGAGAACA GTGGGTGTCC CTCAAGGGCT GGAGAGGGAG CAAAGCTtct
  R
  tctgtctatc tgtctgtctg tctgtctgtc tttctctctg tATACACACA CACCACAATG
  CCCTTTGCCA TTTTTAAAAA TATGTTCACT GTTTCTGTTT CACAGCCAGA ACTGGAGTGA
  TGTCAGTTTG CTTCTCCAGA GATGGCAGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849655	CHEV_3_100627405	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236445529					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100730798 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	within coordinates
Rr581912	regulatory region 581912	1816 bp distal
Rr581913	regulatory region 581913	1941 bp distal
Rr581914	regulatory region 581914	1805 bp distal
Rr581915	regulatory region 581915	1890 bp proximal
Tssr30883	transcription start site region 30883	1970 bp upstream
Vtcn1	V-set domain containing T cell activation inhibitor 1	1977 bp upstream