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rs236445529 SNP Detail
Summary
  • ID
    rs236445529
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:100730798 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      TGCTGTGGG AAGAGTGGCC AGAGGACACA
    ATCACAGGGA AGCCCATGGC TGAGGGGAGA GTGAGGATGA CTGGGCAGGG TGGGGGGCAT
    TAGCAGAGTC ACAGAGAACA GTGGGTGTCC CTCAAGGGCT GGAGAGGGAG CAAAGCTtct
    R
    tctgtctatc tgtctgtctg tctgtctgtc tttctctctg tATACACACA CACCACAATG
    CCCTTTGCCA TTTTTAAAAA TATGTTCACT GTTTCTGTTT CACAGCCAGA ACTGGAGTGA
    TGTCAGTTTG CTTCTCCAGA GATGGCAGAA                                 
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320849655 CHEV_3_100627405 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs236445529 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:100730798 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm32720 predicted gene, 32720 within coordinates
Rr581912 regulatory region 581912 1816 bp distal
Rr581913 regulatory region 581913 1941 bp distal
Rr581914 regulatory region 581914 1805 bp distal
Rr581915 regulatory region 581915 1890 bp proximal
Tssr30883 transcription start site region 30883 1970 bp upstream
Vtcn1 V-set domain containing T cell activation inhibitor 1 1977 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory