rs236412214 SNP Detail

Summary

• ID
  rs236412214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGCTC CCAAATTCTG
  GGATTAAAGG CGTGCACCAC CACTGCCCAG CTTGTATTTA TTGTCTTTGT AAGCTCTTAC
  ATAATGCAGG GTCTTTTGTA GCACAGGTCT CCTTGGCCTT TTGTAGACCG GGGGTGGGGG
  TGGGGGGAGG GTGGGGTGGG GTGGGGGGAT ATATGAGACC TTGACTGACT GCTTGTCCTG
  Y
  GCACAAGCTG GAGTGCTTAG ATTATACCCC TGTGCTATCA TTCTGGGCTC TTCAACTTTT
  AATCCTTTAC AAAAAATCAG TAGTTTATTT CTTTTCCGTT TATGTGCCTG TGTGTGACCC
  GATGAGCACA AGGTGCCCTC AGAGGCCTCT GCTACACGAG ACCTTGTCTT TTTTTTTTTT
  TAAAGATTTG TTTATTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333979	CHEV_4_132072781	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236412214					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244177 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	787 bp downstream
Rr377207	regulatory region 377207	551 bp downstream
Rr600996	regulatory region 600996	1576 bp distal
Rr600997	regulatory region 600997	1915 bp distal
Rr600998	regulatory region 600998	838 bp distal
Rr600999	regulatory region 600999	908 bp proximal
Tssr39372	transcription start site region 39372	1038 bp downstream
Tssr43681	transcription start site region 43681	1432 bp upstream