rs236406462 SNP Detail

Summary

• ID
  rs236406462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101205763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCGGCCT CTGTTCTAGT GACCAGTGAG
  CTCCTAAGAA AGAAGCTCTC ATCTGCCTTC CCAGGGAGAG TGTCTCTGTg ggctgaggga
  gagctcagcg gtggagcttg cccaggagtt tgcaaggcct caagtttgat ctctggcccc
  R
  ccaaaagaAT AAATGAAAGT CTGTATCTAT GTGAGCCCTT TCCCTGGGGT TTCAGGATTC
  CAAGTGCTGT GTGACCTAAG TTTTAGCTTT TCCTTTGTAT CAAGGTTGAT GGAACAGTAT
  CTGTCTCACC TGGGATGGTG GTATCTGCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851739	CHEV_3_101102370	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236406462					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101205763 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	1839 bp upstream
Gm65445	predicted gene, 65445	within coordinates
Rr582001	regulatory region 582001	1670 bp distal
Rr582002	regulatory region 582002	951 bp distal
Rr582003	regulatory region 582003	1576 bp proximal
Tssr30898	transcription start site region 30898	941 bp downstream
Tssr30899	transcription start site region 30899	911 bp downstream
Tssr34786	transcription start site region 34786	1881 bp upstream
Tssr34787	transcription start site region 34787	1750 bp downstream
Tssr34788	transcription start site region 34788	1787 bp downstream