rs236401495 SNP Detail

Summary

• ID
  rs236401495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83751017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGGCCGA TCAGCACTGC
  TGTGGAGAAC TAAAACAGGC AGAGGCGCTG GCTCAGGGGA CCTTTAGGCC TCCGGGACAG
  TCAGTCCCTG CCTGCTCTGC ACAGCGCTGT TACAAATGCA CTTTGGTTTT CTCGGTTCAC
  AGAAACCACA CTCAGCTTTC AAAAAGGTGG TCTCTCTGAA GGCCACTTCT AAAACATTTT
  R
  GACAGTGATC CAAAGTAAGA AAAAAAAAAC ATTTTATACA GCACTCCACC AAACACATAC
  CCAACGTGTG ACAGAGCGCA CACTCACTTT GCCTGCTCTC GTTTTTACTG TTAGCACTGT
  TTTTGGAGCT GGAGCTGAGG ATCTAACCGA AGGCCGCATG CATGCCTGTA CCCCCATGTC
  CCATTTCATA GCTTCCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039039	MGP_WTSI_6_83724029	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236401495					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039039	MGP_WTSI_6_83724029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83751017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	1030 bp proximal
Gm52907	predicted gene, 52907	1850 bp upstream
Rr632937	regulatory region 632937	211 bp proximal
Rr632938	regulatory region 632938	1634 bp proximal
Rr632939	regulatory region 632939	1768 bp proximal
Rr632940	regulatory region 632940	1861 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1893 bp upstream
Tssr57375	transcription start site region 57375	1603 bp upstream
Tssr61705	transcription start site region 61705	1525 bp downstream
Tssr61706	transcription start site region 61706	1540 bp downstream
Tssr61707	transcription start site region 61707	1547 bp downstream
Tssr61708	transcription start site region 61708	1575 bp downstream
Tssr61709	transcription start site region 61709	1634 bp downstream
Tssr61710	transcription start site region 61710	1711 bp downstream
Tssr61711	transcription start site region 61711	1732 bp downstream