rs236400052 SNP Detail

Summary

• ID
  rs236400052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101014892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCTCAT ATGTCACCTC TTAGGTAAAA
  GCAACTCCAA ACACCAAGTC AAAATGAACC CCTTCCTTCC CGCTTCCCCC CCAGTGCTGA
  GCTGGGGTCA AGAAATACAC TGTTTTTACC ACTGTCTACA ACAGCCCAGT CAAGCACCCA
  R
  TGAGGTGCTA TACCTTGGTC ACTGCCAGCT GGGTCTGAGT GAGTCTGGCC CACTGGTCGG
  GGCTTAGTGA GAAAGCTTCA AGGAAAAGTG AGCCTCAGAG GCAGAGGGAC TTAGACAGGG
  AAGAGAGGGG GCAGGCAGGC TAGAAGGCGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850929	CHEV_3_100911499	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236400052					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101014892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13618	CpG island 13618	1856 bp proximal
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581960	regulatory region 581960	1592 bp distal
Rr581961	regulatory region 581961	1258 bp proximal
Tssr34770	transcription start site region 34770	1220 bp upstream