rs236380056 SNP Detail

Summary

• ID
  rs236380056
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141297596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAAGTC TGCATGCTTG
  TTGTGCTTGT ATTTACCAAC TGTGTTATAT TCCTCAGCAC AGAAATCTGT AGTTTTGTCT
  ATACCATCTC AATTCCTAGT ATCAGACTAT GGGAAGGATA TAATGGGATA TACAGAATAT
  AAAGAATCAG GTCTTAAGTG GTGGGAGGGA TCCTTCAGAG ATGAGCCAAA AGCATTGACA
  M
  AGAAAGTCAA TGCACTATGA GGCTCCAAGG GCCAGAACAA ACAGAGGTGG GAATCGTAGT
  AGGGAGAAAC CTGCCTTGGC CACTGATTGT AAAGAATGAA GAGAGATCTG CCATGTTATC
  ATCCTCCTGG AGAAAGTCAG ACTTTCTTTC AGTTGCTGCA GAAGTCGTTT TTCTCCACAA
  TGGCTTGAAT TATTTGATAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993594	CHEV_3_141254799	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236380056					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141297596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1966 bp distal
Tssr32042	transcription start site region 32042			229 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant