rs236377468 SNP Detail

Summary

• ID
  rs236377468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8732158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCGCGGC GGGCAAGGAG
  GAGTTAACTG CAGTGGCCGC TCAGCGCTCG GCTGCGGGAG GTGCGTGCAC ACTGATCCCA
  CTCACGCTCA GTCTCCGGTT AAAACTCAAC CATCCCTTTC CCACGCTGCG CCCCTTCCCA
  TGGATAGGGG GAGGGCGGGG AAGGCGGAGA GGTTGGGGCA GGGGCGGGGC CACGGCTCCC
  S
  GGTAACCGCG TGCCCCGGCC AATTGGCGCC TCGCTGCGCA GATTGGCAGC CGCATGGGGG
  CGGGACGAGC GGAGGCCGAG GCTGGCTGCT CCCCGCCCCC GGAGCCCGCC CCTGCCCGGC
  GGCAGTGCGT CGGCTCCGCA GGAGTTCGGC TGGGGGCCGC GGGCGGCGGT GGGCCGGCGG
  CGGGCAGAAA TGGGGGGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356905127	MGP_WTSI_3_8667098	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs236377468					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356905127	MGP_WTSI_3_8667098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8732158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1977 bp distal
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	mRNA-UTR
Rr573306	regulatory region 573306	557 bp distal
Rr573307	regulatory region 573307	46 bp proximal
Rr573308	regulatory region 573308	148 bp proximal
Tssr32550	transcription start site region 32550	1299 bp upstream
Tssr32551	transcription start site region 32551	255 bp upstream
Tssr32552	transcription start site region 32552	120 bp upstream
Tssr32553	transcription start site region 32553	86 bp upstream
Tssr32554	transcription start site region 32554	52 bp upstream
Tssr32555	transcription start site region 32555	42 bp upstream
Tssr32556	transcription start site region 32556	179 bp downstream