rs236314488 SNP Detail

Summary

• ID
  rs236314488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95288009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACGAGC CCGAGCGCCA
  CGTGGTGAAC ACATACACCA ACTGCCGCTT GTCCCCTCCA CCCCTGGTGC CTCGAGTAGC
  ATTGCCCAGA GAGGCCGCAG CTCCTGCACT CCCAGCCGCG GCTGCGGGAA CTGCCCCCAC
  GCCCGCGGCA GGAGGGCGGT ACGGGGTGCG GGGGTCCATG CGAGAGTGAG CGCGGGGTGG
  Y
  GCTGCAGGAG GCGACCCCGG CCGTCCCCAG CCGGCCCCGG CCGCCCCTAC CGCGGCACCC
  AGAGGCCCGT CGGGGTTGCA CTGCTGCAGC GGCTCTTTAT GCCACTTGTA GTCCAAGAGG
  TTGAGCATCG TGAGCACCAG TAGCAGTGCA TAGCCCGCGC ACAGCACCAG CGCCTTCCTG
  CGAAATACCT TCATCCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378551927	MGP_WTSI_9_95306375	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236314488					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378551927	MGP_WTSI_9_95306375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95288009 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	Coding-Synonymous
Gm35915	predicted gene, 35915	1505 bp upstream
Gm37805	predicted gene, 37805	1448 bp upstream
Rr684785	regulatory region 684785	372 bp distal
Rr684786	regulatory region 684786	168 bp distal
Rr684787	regulatory region 684787	within coordinates
Rr684788	regulatory region 684788	8 bp proximal
Rr684789	regulatory region 684789	167 bp proximal
Rr684790	regulatory region 684790	756 bp proximal
Rr684791	regulatory region 684791	1410 bp proximal
Tssr86547	transcription start site region 86547	1469 bp upstream
Tssr90901	transcription start site region 90901	1415 bp upstream
Tssr90902	transcription start site region 90902	1395 bp upstream
Tssr90903	transcription start site region 90903	1208 bp upstream
Tssr90904	transcription start site region 90904	1152 bp downstream
Tssr90905	transcription start site region 90905	1228 bp downstream
Tssr90906	transcription start site region 90906	1245 bp downstream
Tssr90907	transcription start site region 90907	1271 bp downstream
Tssr90908	transcription start site region 90908	1284 bp downstream
Tssr90909	transcription start site region 90909	1325 bp downstream
Tssr90910	transcription start site region 90910	1347 bp downstream
Tssr90911	transcription start site region 90911	1394 bp downstream
Tssr90912	transcription start site region 90912	1811 bp downstream