rs236310347 SNP Detail

Summary

• ID
  rs236310347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGCAAC AGGCTCAGGG
  AGATCATTTG CCACATGGCT AATAAGTAGC AAAGCCAGGA TGGGGATGTC AGCTGTCTGA
  CTTTGTAAAG CCATTCATCA AGCAATGCCC AAGGGCACTG GGCAAAGAGA GACACGGGCT
  GAAGGTTAAA TCAATCTTCA TGCGGGAGCT GGACCAAGCC TCCTCCTCTG CCAAACTCCC
  R
  GAGATGCTTA TAGACGGATA GGAAAACTCT AGGTAGAACC TTGTGTTATT CTATTCTGCA
  GAAACGTATA GACCTTAGAT TGCTTCATAC TTTTATTTGG ATCTCCCCAG CCACAGAGGC
  CACACCCTGA GCCAGTCACC GGAAGAACAA GATTATCGCT TTCAAGAATC TGAAATCACA
  AAGGGTTAGT ATTTAGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359366558	MGP_WTSI_3_116673010	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236310347					SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359366558	MGP_WTSI_3_116673010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763741 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	1222 bp distal
Palmd	palmdelphin	1105 bp upstream
Rr583817	regulatory region 583817	1815 bp distal
Rr583818	regulatory region 583818	774 bp distal
Tssr35360	transcription start site region 35360	1541 bp upstream
Tssr35361	transcription start site region 35361	1524 bp upstream
Tssr35362	transcription start site region 35362	1459 bp upstream
Tssr35363	transcription start site region 35363	1400 bp upstream
Tssr35364	transcription start site region 35364	1324 bp upstream
Tssr35365	transcription start site region 35365	1303 bp upstream
Tssr35366	transcription start site region 35366	1277 bp upstream
Tssr35367	transcription start site region 35367	1258 bp upstream
Tssr35368	transcription start site region 35368	1154 bp upstream
Tssr35369	transcription start site region 35369	1088 bp upstream
Tssr35370	transcription start site region 35370	1065 bp upstream
Tssr35371	transcription start site region 35371	569 bp upstream