rs236271156 SNP Detail

Summary

• ID
  rs236271156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86847955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATTCCAGC ATGGACCAGA ATATTACGTT CTATCACCAT
  GCTTCATCCT CAGCAGAACA CAACACGCAG AAATAGGAAA TACTTCCTTG TTTGTCCCCC
  Y
  CCCCCCCCCC GGGAATGCCC TGCATTTAGA GGATGAAGGG TACACACACA CTCGCACCCC
  TTTTTTTCTT TTTCTCATTC GTGCAAGGTT TCATGATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321847598	CHEV_6_86820967	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236271156					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86847955 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Rr633547	regulatory region 633547			205 bp distal
Rr633548	regulatory region 633548			790 bp proximal
Tssr57515	transcription start site region 57515			160 bp downstream