rs236215932 SNP Detail

Summary

• ID
  rs236215932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113601531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGCTTTCT CTCCGACCCC GAGCATCTTG
  TCCCTACCCA CTGCATCTAC CCCGAGAAAA TGCCCGGCCC CTACCAGTGA TTTCGGATGC
  AGTGTTAACC CAGTTCCCGG TCAGGTTCGG CATGCGAACC TGCCTTGGTG ATGACAACTT
  R
  GAGGGTTACA GACAAAAAAA ATGTATGAAC AGACAAGAAC CAGCCTGTGT CATAATTGCT
  GCGCTAGGCA CCGAGCTTAG AGGTTTGCGA AAGCATGGGC AGAGTGTGGG TGCGTCCAGG
  TGAAGAAAGA GCACGCAGCT TAGGAGAACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911161	CHEV_6_113574564	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236215932					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113601531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	within coordinates
Gm66537	predicted gene, 66537	1222 bp downstream
Rr636555	regulatory region 636555	601 bp distal
Tssr58233	transcription start site region 58233	533 bp downstream
Tssr58234	transcription start site region 58234	508 bp downstream
Tssr58235	transcription start site region 58235	406 bp downstream
Tssr58236	transcription start site region 58236	97 bp upstream
Tssr62461	transcription start site region 62461	1038 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	Intron