rs236190010 SNP Detail

Summary

• ID
  rs236190010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAAAGA AAAGGAATAA
  AAAGTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAAC TCACCCTTTT CAAGCTATAT AAACATCAAG
  GGGTAGTTAA ATAACAATTT TAGATATGGA ATATATTGTG AAAACAATGT GGAACATTAG
  Y
  TAAGAGAATA TGTTTAAATA TGAACTCACT ACTTGATATT TTTGTAATAT ATATCTTACA
  AAAGTTAGGG TGTCTATAAA AATCTTAAAA AGTATTTATT TCTTTTCTTA TTTCTGAATC
  ACAAAAAGGG GGTCTGCAGG GGATCCTGGT TGATGACTTT TAAGAGTTTT GCTTCTCAGA
  TGTAGTGGCT TTAACTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593261	MGP_WTSI_3_79689503	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236190010					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593261	MGP_WTSI_3_79689503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	476 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	322 bp distal
Rr578606	regulatory region 578606	253 bp proximal
Rr578607	regulatory region 578607	773 bp proximal
Rr578608	regulatory region 578608	1222 bp proximal
Rr578609	regulatory region 578609	1271 bp proximal
Rr578610	regulatory region 578610	1311 bp proximal
Tssr29596	transcription start site region 29596	1010 bp downstream
Tssr29597	transcription start site region 29597	989 bp downstream
Tssr29598	transcription start site region 29598	491 bp downstream
Tssr29599	transcription start site region 29599	462 bp downstream
Tssr29600	transcription start site region 29600	413 bp downstream
Tssr29601	transcription start site region 29601	384 bp downstream
Tssr29602	transcription start site region 29602	368 bp upstream
Tssr29603	transcription start site region 29603	459 bp upstream
Tssr29604	transcription start site region 29604	531 bp upstream
Tssr29605	transcription start site region 29605	600 bp upstream
Tssr29606	transcription start site region 29606	633 bp upstream
Tssr29607	transcription start site region 29607	1303 bp upstream
Tssr29608	transcription start site region 29608	1321 bp upstream
Tssr33752	transcription start site region 33752	582 bp downstream
Tssr33753	transcription start site region 33753	600 bp downstream
Tssr33754	transcription start site region 33754	1215 bp downstream