rs236157431 SNP Detail

Summary

• ID
  rs236157431
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGCCAT GAAATATGTT
  CTCCTTACGT GCCTCAGCCT TTCAAAGTTC TGTGCATTAG AGTCAGGAAT TCCATTCTTC
  CTGGAGCTAA GCGTGGGGCC AGCTGTGTAA GTAAAGTTTT GTTTTTCTTC TTAAACAACT
  TTTTCCCTCT ATTTAAAAAT GTGAAGAAAA AGGCAAAAAA AACAACAACA AAAAAAAAAA
  C
  AACAAAAAAA AACCCACCAA AAAACCTAGA TATTCTTTTC TTTCATTTTT GCTCTCTTTA
  GTGGAAAGAA AAGGAATAAA AAGTTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAACT CACCCTTTTC
  AAGCTATATA AACATCAAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ	WSB/EiJ
ss358593258	MGP_WTSI_3_79689243	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ	WSB/EiJ
rs236157431					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593258	MGP_WTSI_3_79689243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	736 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1789 bp downstream
Rr375226	regulatory region 375226	154 bp upstream
Rr578602	regulatory region 578602	1840 bp distal
Rr578604	regulatory region 578604	1763 bp distal
Rr578605	regulatory region 578605	62 bp distal
Rr578606	regulatory region 578606	513 bp proximal
Rr578607	regulatory region 578607	1033 bp proximal
Rr578608	regulatory region 578608	1482 bp proximal
Rr578609	regulatory region 578609	1531 bp proximal
Rr578610	regulatory region 578610	1571 bp proximal
Tssr29596	transcription start site region 29596	750 bp downstream
Tssr29597	transcription start site region 29597	729 bp downstream
Tssr29598	transcription start site region 29598	231 bp downstream
Tssr29599	transcription start site region 29599	202 bp downstream
Tssr29600	transcription start site region 29600	153 bp downstream
Tssr29601	transcription start site region 29601	124 bp downstream
Tssr29602	transcription start site region 29602	628 bp upstream
Tssr29603	transcription start site region 29603	719 bp upstream
Tssr29604	transcription start site region 29604	791 bp upstream
Tssr29605	transcription start site region 29605	860 bp upstream
Tssr29606	transcription start site region 29606	893 bp upstream
Tssr29607	transcription start site region 29607	1563 bp upstream
Tssr29608	transcription start site region 29608	1581 bp upstream
Tssr33752	transcription start site region 33752	842 bp downstream
Tssr33753	transcription start site region 33753	860 bp downstream
Tssr33754	transcription start site region 33754	1475 bp downstream