rs236141573 SNP Detail

Summary

• ID
  rs236141573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87055439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCCTC CAGGTGGCTC
  ATCGTACCGG CAGCAGGCTG CTGTGCCGGT GAAGTCGGAG ACCCACGGCG GGGAGGACGT
  GGCGATATTC GCGCGTGGCC CGCAGGCGCA CTTGCTGCAC GGGGTGCAGG AGCAGAACTA
  CATCGCGCAC GTCATGGCCT TCGCAGGCTG CCTGGAGCCC TACACCGACT GCGGCTTGGC
  R
  CCCCCTGCAG ATGAAAGCCA GACCACCACG ACAACCCGCC AGACCACCAT CACCACCACC
  ACCACCACCA CCACCACCAC AACCACCCCG GTCCATAACA GCGCCAGAAG CCTGGGCCCA
  GCCACCGCCC CGCTGGCTCT GGCGCTGCTG GCCGGAATGC TGATGCTACT ACTAGGGGCT
  CCTGCGGAGT CCTAAACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380333	MGP_WTSI_1_89024292	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236141573					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380333	MGP_WTSI_1_89024292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87055439 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	Coding-Synonymous
Tssr145	transcription start site region 145	1365 bp downstream
Tssr146	transcription start site region 146	123 bp downstream
Tssr147	transcription start site region 147	223 bp downstream
Tssr148	transcription start site region 148	885 bp upstream
Tssr7784	transcription start site region 7784	1779 bp downstream
Tssr7785	transcription start site region 7785	1740 bp downstream
Tssr7786	transcription start site region 7786	1713 bp downstream
Tssr7787	transcription start site region 7787	1384 bp downstream
Tssr7788	transcription start site region 7788	986 bp downstream
Tssr7789	transcription start site region 7789	952 bp downstream
Tssr7790	transcription start site region 7790	899 bp downstream
Tssr7791	transcription start site region 7791	772 bp downstream
Tssr7792	transcription start site region 7792	746 bp downstream
Tssr7793	transcription start site region 7793	735 bp downstream
Tssr7794	transcription start site region 7794	722 bp downstream
Tssr7795	transcription start site region 7795	690 bp downstream
Tssr7796	transcription start site region 7796	667 bp downstream
Tssr7797	transcription start site region 7797	654 bp downstream
Tssr7798	transcription start site region 7798	616 bp downstream
Tssr7799	transcription start site region 7799	379 bp downstream
Tssr7800	transcription start site region 7800	343 bp downstream
Tssr7801	transcription start site region 7801	298 bp downstream
Tssr7802	transcription start site region 7802	176 bp downstream
Tssr7803	transcription start site region 7803	116 bp downstream
Tssr7804	transcription start site region 7804	91 bp downstream
Tssr7805	transcription start site region 7805	22 bp downstream
Tssr7806	transcription start site region 7806	6 bp downstream
Tssr7807	transcription start site region 7807	11 bp upstream
Tssr7808	transcription start site region 7808	116 bp upstream
Tssr7809	transcription start site region 7809	186 bp upstream
Tssr7810	transcription start site region 7810	211 bp upstream
Tssr7811	transcription start site region 7811	240 bp upstream
Tssr7812	transcription start site region 7812	290 bp upstream
Tssr7813	transcription start site region 7813	331 bp upstream
Tssr7814	transcription start site region 7814	361 bp upstream
Tssr7815	transcription start site region 7815	429 bp upstream
Tssr7816	transcription start site region 7816	469 bp upstream
Tssr7817	transcription start site region 7817	481 bp upstream
Tssr7818	transcription start site region 7818	656 bp upstream
Tssr7819	transcription start site region 7819	972 bp upstream
Tssr12838	transcription start site region 12838	1987 bp upstream
Tssr12839	transcription start site region 12839	1977 bp upstream
Tssr12840	transcription start site region 12840	1968 bp upstream
Tssr12841	transcription start site region 12841	909 bp upstream
Tssr12842	transcription start site region 12842	589 bp upstream
Tssr12843	transcription start site region 12843	326 bp upstream
Tssr12844	transcription start site region 12844	121 bp upstream
Tssr12845	transcription start site region 12845	31 bp downstream
Tssr12846	transcription start site region 12846	92 bp downstream
Tssr12847	transcription start site region 12847	563 bp downstream
Tssr12848	transcription start site region 12848	632 bp downstream
Tssr12849	transcription start site region 12849	651 bp downstream