rs236135621 SNP Detail

Summary

• ID
  rs236135621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109139118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCCAAG TGGACTGTAC
  CACTATATTA GTTTATTCAT CGCCAGGGAT CAGACTCAGG ACTTCATGCT GGCTAGACAG
  GCCCTGTACC GACTGAGCCA TATCCCCAGC AAAAGTGATT CTATATATAC TGTATGTGTG
  TGTGTGTGTG TATTATAGTG CGCACACACA CACACACACA CACACACACA CACAGAGGCA
  Y
  CCCACAGGTA AGACAGCCTT TAGGAATAAC CTCATAAACT TTACATTTCC AAATTTATTT
  CCTGTGGGTC ATTGTGTTTT GACTTGCATC TAACAGGGAA GAACTTTTAA GATGGCCCAG
  TCTTGTCATG AATCTGTTTA GAAGGGTCCT TCTGAAACTC ACATTTGAGG AATGGAAACA
  TTGACTTTTG GGTGTTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362799483	MGP_WTSI_4_108954526	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236135621					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362799483	MGP_WTSI_4_108954526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109139118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	575 bp distal
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Gm40225	predicted gene, 40225	1679 bp upstream
Rr398389	regulatory region 398389	1611 bp downstream
Rr597299	regulatory region 597299	1790 bp distal
Rr597300	regulatory region 597300	1499 bp distal
Rr597301	regulatory region 597301	1152 bp distal
Rr597302	regulatory region 597302	1455 bp distal
Rr597303	regulatory region 597303	651 bp distal
Tssr38334	transcription start site region 38334	1606 bp downstream
Tssr38335	transcription start site region 38335	1595 bp downstream
Tssr38336	transcription start site region 38336	1521 bp downstream