rs236098506 SNP Detail

Summary

• ID
  rs236098506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127967698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCTAATC CTCATGGTTT
  GGGGCTGAGA AGCTGTGCAA AGCAAGGGCG GAGGGACGCC TTCTGAGGCT TCCAACTGGC
  GCCCGCGGCC GGGCTGGACA CAGAGCAGTG TACCCTGAGC GCCCCCTAAG TTCCGCTCTG
  CGAGGTGGCC GCCACGGGCG GACGGGGAGG GGCGGGTACA TTCTGAGTGG AGGATGGGCG
  W
  GCATGCAGCT GCCCGCAGGC CAAGACACTA GGGTAAACAC GCCGGGGTGG GCGGCGCACG
  CAAACTGCAG GACAGCCGGC GGGGCCACCC TCCCCACTAC CTGTCGCAGC CTGCACGCGC
  CAGCGGCCTG GGGGCCGTGG GGGGTGGGGC TTACCTTCCG GCTTGCCGGG GGCCGGACTA
  AACGGGGGCG GAGCCCGCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355609312	MGP_WTSI_2_127951514	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236098506					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355609312	MGP_WTSI_2_127951514	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127967698 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	260 bp upstream
Cpgi12234	CpG island 12234	1822 bp distal
Cpgi12235	CpG island 12235	within coordinates
Gm74510	predicted gene, 74510	439 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr397296	regulatory region 397296	1555 bp upstream
Rr564648	regulatory region 564648	1231 bp distal
Rr564651	regulatory region 564651	within coordinates
Rr564652	regulatory region 564652	375 bp proximal
Rr564653	regulatory region 564653	450 bp proximal
Tssr20042	transcription start site region 20042	252 bp upstream
Tssr20043	transcription start site region 20043	1780 bp upstream
Tssr20044	transcription start site region 20044	1809 bp upstream
Tssr26150	transcription start site region 26150	1622 bp downstream