rs235971251 SNP Detail

Summary

• ID
  rs235971251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90015947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTGTAA TGGGAAATAA
  TGCACTCTTC TAGTGTGTGT CTGAAGACAG CTGTAGTGTA CTCATATAAA TAAAAAATAA
  ATCCTAAAAA AAAAAAGAAT TCCCTTCCTC TTATTGATAC CCTTTCTTGT CTCTAGGGAC
  CCCCCATATA TCTTTCTAGA CATTTCTGAG AACTCATGTA AATACATGCT GAGCCCCCTC
  Y
  TTGTAGTTTG TAACCTTTGC TCATTCCATA CCATTTTAAC AAATATTTTC CTTGAAACAC
  TATTTCTCAC CCATTGCATG GAGGTATCAC ATAGGACTTT ATCAGGCATC CTGTTCTCCA
  GTGTGTGGCT TAGAGCCAGT GGAATGCACG GCGTGTCCGA GAACCACTTC ACACAGGGAA
  GAGAATACAG ATTTTTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss397289480	MGP_WTSI_16_90219304	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T	C	T	C	T	T	T	T	C	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs235971251					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T	C	T	C	T	T	T	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397289480	MGP_WTSI_16_90219304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90015947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	1241 bp proximal
Rr519070	regulatory region 519070	1363 bp distal
Rr519071	regulatory region 519071	748 bp distal
Rr519072	regulatory region 519072	1205 bp proximal
Rr519073	regulatory region 519073	1706 bp proximal
Rr519074	regulatory region 519074	1714 bp proximal
Sod1	superoxide dismutase 1, soluble	1703 bp upstream
Tssr139276	transcription start site region 139276	602 bp upstream
Tssr139277	transcription start site region 139277	1475 bp upstream
Tssr139278	transcription start site region 139278	1510 bp upstream
Tssr139279	transcription start site region 139279	1535 bp upstream
Tssr139280	transcription start site region 139280	1561 bp upstream
Tssr139281	transcription start site region 139281	1577 bp upstream
Tssr139282	transcription start site region 139282	1649 bp upstream
Tssr139283	transcription start site region 139283	1688 bp upstream