rs235967204 SNP Detail

Summary

• ID
  rs235967204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132613815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAAGGG CCTACATCAA
  ACCCTATCTG TTCTCACTAC TGGAATACTG GAAGCCAAGC TCTTTGGGGG AAGTGGGTGT
  TAAGATCATC AACACTGCCT CAATTTAGTG TCTTGTTTTA TTTGGGGGGG TGTTCTAGAC
  AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCACT TTGTAGACCA GGCTGGCCTC
  R
  AACTCAGAAA TCCGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCA TGCGCCACCA
  CTGCCCGGCT TCAACTTAGA GTTTTAACGT TAGTAACATG AAGGGCTGTC CCTTCATTCA
  GTGCTCAGGG CTTCTCCAAA CAAGCACATT ACAAGTGCTT TAATTCCAGA CAAATAGTGA
  CTTAGATATC AGATCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337134	CHEV_4_132442419	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235967204					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132613815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	1513 bp distal
Gm13033	predicted gene 13033	88 bp downstream
Gm70413	predicted gene, 70413	288 bp downstream
Rr601102	regulatory region 601102	1963 bp distal
Rr601103	regulatory region 601103	1191 bp distal
Rr601104	regulatory region 601104	1156 bp proximal
Rr601105	regulatory region 601105	1340 bp proximal
Rr601106	regulatory region 601106	1450 bp proximal
Tssr39426	transcription start site region 39426	1952 bp downstream
Tssr43724	transcription start site region 43724	1981 bp upstream
Tssr43725	transcription start site region 43725	1714 bp upstream