rs235919651 SNP Detail

Summary

• ID
  rs235919651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135245036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACTAAG GCATTCCGAG
  TTTTTATTCT AGAATCTTCT ACAACCAGGA AGCTAAATGA GGCAGATGGG TGGGGACTTT
  GGTGGCCTTT CTGGGTTGCC ACTGCACAGT GGATTTCATA TGTGTTGGGA GAAGTTCTCC
  AGTGGCAGCA TGGGGTCGAG TGGAGACCAC AGGCCTGACA GAGAAATGCA GGGGAGTGGG
  Y
  GTTGCCAACA CTAATCCTGT TATGGTACCT CAGCGAACTC GGTGTCACTG GAAAGTTTCT
  AGAACACCCC ACCCCAGCCC CCAAACATAA AAGCAATAAA TCTCTGAAGG CAAGAAAGAC
  ACCAGGATGG GAAAGAAACG CTCGCAATTT CTCTAGGGCA GAGCCCGCTG ATCTCTCTTT
  TGGACGCCAT GGCTGATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363368301	MGP_WTSI_4_135073640	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	T	C	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	C	C	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235919651					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	T	C	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363368301	MGP_WTSI_4_135073640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135245036 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602053	regulatory region 602053			328 bp distal
Rr602054	regulatory region 602054			597 bp distal
Rr602055	regulatory region 602055			199 bp proximal
Rr602056	regulatory region 602056			1848 bp proximal
Stpg1	sperm tail PG rich repeat containing 1			Intron
				Noncoding-Transcript-Variant