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rs235919192 SNP Detail
Summary
  • ID
    rs235919192
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:102971198 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATATTAAAAT TAGCTTTGGT
    TGCTCAGAGA CCAAGGAGCC AGAACACGAG ACAGCTTGGA AGTTGAGAGA CCTAATGAAA
    GAATACAAGA AAAAGCGCTT GGAAGAAATA GGCAGGGTGG TCCTCGACAA ACTCCGGTCT
    AGCACGGCAG CGGGAGTTTT TACACAGACC GAATCAAGCC AGAGGATCCG GCGCTGCCTG
    R
    GGGGCTCCGC GGGATCGAAT GCGTTGGGAA CCCCTTTCCA AACCGAAGGG CTGGCTGTCT
    CTCCGGGATC TAGAGGAACG GGCCACACGG ATCTAGTGCG GAACTTACGC GGCGAAGCTG
    GCCTGCTTGC GGGTGCTCGT CGGAGAGCTA TGCATGGTGG TGACTTTTTA GACCAGGGCT
    CGGCGCCCCC TTCCCCAGCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss362654222 MGP_WTSI_4_102786606 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235919192 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss362654222 MGP_WTSI_4_102786606 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:102971198 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14511 CpG island 14511 within coordinates
Dnai4 dynein axonemal intermediate chain 4 Intron
Noncoding-Transcript-Variant
E030030F06Rik RIKEN cDNA E030030F06 gene within coordinates
Mier1 MEIR1 treanscription regulator 389 bp upstream
Rr596355 regulatory region 596355 903 bp distal
Rr596356 regulatory region 596356 within coordinates
Rr596357 regulatory region 596357 405 bp proximal
Rr596358 regulatory region 596358 544 bp proximal
Tssr38082 transcription start site region 38082 384 bp upstream
Tssr38083 transcription start site region 38083 401 bp upstream
Tssr38084 transcription start site region 38084 461 bp upstream
Tssr38085 transcription start site region 38085 711 bp upstream
Tssr38086 transcription start site region 38086 775 bp upstream
Tssr38087 transcription start site region 38087 915 bp upstream
Tssr42583 transcription start site region 42583 209 bp downstream
Tssr42584 transcription start site region 42584 221 bp downstream
Tssr42585 transcription start site region 42585 237 bp downstream
Tssr42586 transcription start site region 42586 304 bp downstream
Tssr42587 transcription start site region 42587 315 bp downstream
Tssr42588 transcription start site region 42588 356 bp downstream
Tssr42589 transcription start site region 42589 561 bp downstream
Tssr42590 transcription start site region 42590 811 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory