rs235906163 SNP Detail

Summary

• ID
  rs235906163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTATTTGG AGGTTTGGAC
  TTGTTGAAAT AAGTGTATCA TTGTAGGCTT GGGCTTTAAG TCCTGTATCC TGGCTACCTG
  GAAGTCAGTC TTCCACTAAC AGCCTTCAGG TGAAAATGTA GAACTCTCAG CTCCTCCTGC
  ACGATGCCTG CCTGGATGCT GCCATGCTCC AGCCTTGATG ATAATGGACT GAACCTATGA
  R
  CCTATAAACC AGCTCCAATT AAATGTTTTC AGCATAAGAG TTGCCTTTGT CGGGCTGGCG
  AGATGGCTCA GCAGTTAAGA GCACCGACTG CTCTTCCGAA GGTCCTGAGT TCAAATCCCA
  GCAACCACAT GGTGGCTCAC AACCATCCGT AATGAGATCT GATGCCCTCT TCTGGTGTGT
  ATGAAGACAG CTACAGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336793	CHEV_4_132400504	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235906163					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	1124 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	1420 bp upstream
Rr367719	regulatory region 367719	1317 bp downstream
Rr367720	regulatory region 367720	1130 bp downstream
Rr601096	regulatory region 601096	1477 bp distal
Rr601097	regulatory region 601097	1465 bp distal
Rr601098	regulatory region 601098	930 bp distal
Rr601099	regulatory region 601099	1128 bp distal
Tssr43718	transcription start site region 43718	1644 bp upstream
Tssr43719	transcription start site region 43719	1405 bp upstream