rs235902339 SNP Detail

Summary

• ID
  rs235902339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94261582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCCTC TGCATCCCTG
  TCCGCGCCCA CCAAACGCAC CTACACATAC GCTCCCATCG TTAAACTTTG GGGCCAACTT
  TTTAGGACAA GGAAAAAACT GCCAGCGAGC GAGAAAAGCC AAAGCTAGCG TGGCCTTTTT
  ACCTAAGACT TCTCGCTGGC CTCTCATTGT CCTTCCAGCA AAGGGGGCGG CGGTGGCCAG
  Y
  CCCCTTTGGC TTCTAGGAGA GCCGAGAAAC CTAAGCACTG CTTTGGGGAG TAAAGATCAC
  CGCAGGGTGC GGGTCCTGCA CAAGCGTGGG CGAGCCGGCC ACCTCGGAAT TCGCCGCCCA
  GAGGCGGGGT CCAGTAATCG GGGCACTGGT GAGGCCGGGA CAGAAAGAAC AGCCCCCACC
  GCCAAGAAGC CAGTGCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369251525	MGP_WTSI_6_94234595	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235902339					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369251525	MGP_WTSI_6_94234595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94261582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	within coordinates
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	684 bp upstream
Rr634855	regulatory region 634855	1602 bp distal
Rr634856	regulatory region 634856	789 bp distal
Rr634857	regulatory region 634857	571 bp distal
Rr634858	regulatory region 634858	24 bp distal
Rr634859	regulatory region 634859	within coordinates
Tssr62172	transcription start site region 62172	1060 bp upstream
Tssr62173	transcription start site region 62173	999 bp upstream
Tssr62174	transcription start site region 62174	810 bp upstream
Tssr62175	transcription start site region 62175	781 bp upstream
Tssr62176	transcription start site region 62176	755 bp upstream
Tssr62177	transcription start site region 62177	665 bp upstream