rs235897891 SNP Detail

Summary

• ID
  rs235897891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118222012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTCTG GGCTCTGAAA
  ATGGCGGCAG CTCTGGGGGA ATCGGCTCAG GAGAACCTTG ATGAGGCTCT GGTACCAGGA
  GACCGTCATG GAGAGGAAAC AGTCCTGGGG AGGGGTCACA GCCCTGAGCC CACCACTCCA
  GAGTCACCCC AGATGCCTTC CCTCCAACCC GGCCACTACG GCACTGCTGG AAGCAATGCT
  Y
  ACCCTGAGGA GGCAGGTCTC TTACCAGCTG GGGGTCAATG TCCGCAATGG ACTTGGCGTG
  GACTGCCTCT AAGAGCTCCT CCAGCTCTGC CAGGGCCAGG CGCCCTCCAA GCCTTAGCCG
  GTCAGGCCCT GGTGGCTCCA GCAAGAATAG GCGCTTCCAG AGGGTATCCC GCCGGCAGTG
  CCCACCAGCC AACCTAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321282770	CHEV_4_118037420	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235897891					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118222012 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598383	regulatory region 598383			1507 bp proximal
Szt2	SZT2 subunit of KICSTOR complex			Intron
				Noncoding-Transcript-Variant