rs235885536 SNP Detail

Summary

• ID
  rs235885536
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156908159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTTAC CTTGTCCTGC
  CCTCCTCGTA TCTGAAATAG TCCCAGTTCT GAGCCCACAG GTCTTAGCCT CCTTACTCTG
  CCTTTATATA AATCCAATTT GCTTATTCCA GATTTGTTCA ACCCTTTTCC ATTATAACAC
  AACAGCATCA CCAAGTTCAT GCTCAGAAAA CAGGCCAAAA AAGTCATTTT TTAAAATCAC
  S
  CCCCCCCCCC CCACCCCAAG AAACCTCAAA GTTTTAGGTA AGTTTACAAT TTTGTATCAG
  GCCTGGTTCC CAGCTGTAGG TGGGATGTGC TTGCAACCTT TCATTGATTA GTGGCTACAT
  CATTGATTAT GCAGCAGCAA TGATGTCAGG CCACGCCTTG TGGGAAGCTC TTCAAAAAGG
  CAGATCCAAG GGGACCCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	FVB/NJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352053236	MGP_WTSI_1_159010720	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	FVB/NJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235885536					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352053236	MGP_WTSI_1_159010720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156908159 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	454 bp distal
Rr421336	regulatory region 421336	1036 bp distal
Rr421337	regulatory region 421337	803 bp proximal
Rr421338	regulatory region 421338	892 bp proximal
Rr421339	regulatory region 421339	1014 bp proximal
Rr421340	regulatory region 421340	1053 bp proximal
Rr421341	regulatory region 421341	1508 bp proximal
Rr421342	regulatory region 421342	1594 bp proximal
Rr421343	regulatory region 421343	1815 bp proximal