rs235872470 SNP Detail

Summary

• ID
  rs235872470
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88559319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgttgCCTA AGGTAGTCTG CCTGAGTCCA
  GTCCAGCAAG CATTCACTAT GTTCGGGCAG GACAACAGGG ACCATTTTTG CCACTCCGGA
  GAAATGGTGG GTACTCTGCT CCGTCCCCCT AAGCTAGGAA GAGCCGGAGT GAGTGAGTGC
  K
  GCAGCTCATG AGTGATTTGT TTTGGTTTGC ATGGTTGATC AAGACCATTG TTGGGCGACA
  CCTAGTGGTG ACAAGTTTCA GCAAAGCTCC TGGTCCCCGG TTGATGACAA AGGACAGGGA
  AGTGCCTGTC GTGAGCCGGC CAGGGTGAAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321203603	CHEV_4_88286986	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235872470					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88559319 () rs orientation: forward

Symbol	Name	Function Class
Rr398329	regulatory region 398329	within coordinates
Rr595016	regulatory region 595016	within coordinates
Rr595017	regulatory region 595017	52 bp proximal