rs235872338 SNP Detail

Summary

• ID
  rs235872338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139973024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGAGCT CCAGTTTCCT
  TCCATCTGGT TCAGCCTAGG CCATGACCAA GCCCATGCGG GACACACACA CACACTCACA
  CACAGATGCG AGCCATACTG TTGAAACTCC TCCAGCCCCA GATGTGCTCA CAGTTCCCTG
  CCCAAGTTCC CTCGATCTGC ACCTGCTCCC AAACCCAGAG CTTCTAGGAC CTCAAGTCCT
  R
  TACTTCCACG TGTAGCTGGG TACACTCCTG TCCAGCTCTA ACAGAAATAC AGTCACCGGC
  TGTCACACAG CCCTCTAGAG ACCAGGCAGC ACACCGGGGA TCGGCGTGAA CCGCCACACC
  TCAAACACCC TTTCCTTAAC AGGCTCCCAC ATGCCGCGAC GCTCACACAC TTACCCTCCT
  GAAGGAGTTC ACACCCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363487602	MGP_WTSI_4_139801628	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235872338					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363487602	MGP_WTSI_4_139801628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139973024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15190	CpG island 15190	884 bp distal
Cpgi15191	CpG island 15191	105 bp proximal
Gm69798	predicted gene, 69798	691 bp upstream
Gm69835	predicted gene, 69835	1206 bp downstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603404	regulatory region 603404	1495 bp distal
Rr603405	regulatory region 603405	274 bp distal
Rr603406	regulatory region 603406	1061 bp proximal
Tssr44245	transcription start site region 44245	1038 bp downstream
Tssr44246	transcription start site region 44246	1081 bp downstream
Tssr44247	transcription start site region 44247	1205 bp downstream