rs235851658 SNP Detail

Summary

• ID
  rs235851658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99568727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAGGAC TGCGTAAAGG
  AGACAGAACC TTCTCCACAG GAGACTCTGA GTCAGGCACA GGCTCATCCA TGGGGCTTAG
  GGACGCTCTC TCGTTCTCAT CTTTGGCCTC ACTGAATTCA AAGCTCACTG GAACTGCCTG
  TGGCTTTTCA GTGACTTCTG TGGGTAGGTG ACTGGACTTC TCATCGGTGG GAGATTGGTA
  R
  TAAGGTGTGT GGCCAGCACT GCCTGTCACA GACTGGGATG GCGACACTAC TTCCAGGGTC
  TTCTCCTCAG GACTGGCACA ATGTTCTTCA ACTACTGCCT GGGTCACTCC AGGGGACACT
  GACCTTGCTT CTCCCTCTGC TGACACTTTA ATCTCATTGG GTGTCAGAGA GAAATTCACG
  CTACGTTCAC CCAGGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389674864	MGP_WTSI_13_100202174	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235851658					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389674864	MGP_WTSI_13_100202174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99568727 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4150	transcription start site region 4150	1993 bp upstream
Tssr120833	transcription start site region 120833	1929 bp upstream
Tssr123698	transcription start site region 123698	1977 bp upstream
Tssr123699	transcription start site region 123699	1893 bp upstream
Tssr123700	transcription start site region 123700	1846 bp upstream
Tssr123701	transcription start site region 123701	1821 bp upstream
Tssr123702	transcription start site region 123702	1802 bp upstream
Tssr123703	transcription start site region 123703	1750 bp upstream
Tssr123704	transcription start site region 123704	1694 bp upstream
Tssr123705	transcription start site region 123705	1393 bp upstream
Tssr123706	transcription start site region 123706	1166 bp upstream
Tssr123707	transcription start site region 123707	974 bp upstream
Tssr123708	transcription start site region 123708	776 bp upstream
Tssr123709	transcription start site region 123709	604 bp upstream
Tssr123710	transcription start site region 123710	589 bp downstream
Tssr123711	transcription start site region 123711	795 bp downstream
Tssr123712	transcription start site region 123712	1025 bp downstream
Tssr123713	transcription start site region 123713	1240 bp downstream
Tssr123714	transcription start site region 123714	1280 bp downstream
Tssr123715	transcription start site region 123715	1313 bp downstream
Tssr123716	transcription start site region 123716	1377 bp downstream
Tssr123717	transcription start site region 123717	1782 bp downstream
Tssr123718	transcription start site region 123718	1876 bp downstream
Tssr123719	transcription start site region 123719	1976 bp downstream
Tssr123720	transcription start site region 123720	1997 bp downstream