rs235839064 SNP Detail

Summary

• ID
  rs235839064
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120016217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCGTCAT GTTCTGCTTA
  GATAGCTCGT AGAGCTGCCA TGCAATGAAA AATGATGTTG TTCGTCTTTA ATGGAGAGCC
  TCCTTAGTGT TGTGACTAGG GGTGTGGGAG TGGAGAAGGA GGTAAAGCTG AATAACCTGA
  GCCTGAATTC GAAGACTCCC AGAAAACTTT GTGAAGAGTG CACATACCAT CACTGTTGAT
  W
  AGATGGGTGA GGGTAAACAA AATATATTCC ATCCTTCTCT TCTTCACAAC AACTAAAGCC
  GCATGCTCAT CTCCAGTTTC CAAACAAGTA CTTTGGCTGC AAAGATGGGC TGCCTACTAA
  ATAAAACCCA GGATCAGAGC GAACCTCTTT GCTTTGCCGG AAACTTAACG GGAACGGGAG
  GTGTAGGGGG CGGGGAGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369858084	MGP_WTSI_6_119989274	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235839064					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369858084	MGP_WTSI_6_119989274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120016217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	275 bp distal
Cpgi17917	CpG island 17917	506 bp proximal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	276 bp downstream
Rr399864	regulatory region 399864	348 bp upstream
Rr637758	regulatory region 637758	1920 bp distal
Rr637759	regulatory region 637759	1107 bp distal
Rr637760	regulatory region 637760	424 bp distal
Rr637761	regulatory region 637761	within coordinates
Rr637762	regulatory region 637762	529 bp proximal
Tssr58518	transcription start site region 58518	645 bp upstream
Tssr62750	transcription start site region 62750	1903 bp upstream
Tssr62751	transcription start site region 62751	1376 bp upstream
Tssr62752	transcription start site region 62752	1342 bp upstream
Tssr62753	transcription start site region 62753	1280 bp upstream
Tssr62754	transcription start site region 62754	1206 bp upstream
Tssr62755	transcription start site region 62755	1117 bp upstream
Tssr62756	transcription start site region 62756	893 bp upstream
Tssr62757	transcription start site region 62757	701 bp upstream
Tssr62758	transcription start site region 62758	620 bp upstream
Tssr62759	transcription start site region 62759	557 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	584 bp upstream