rs235838672 SNP Detail

Summary

• ID
  rs235838672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCACAT ACACACGCAC
  CCACATACAC AAGCACACAC ATACACACGC ACCCACATAT ACAAGCACAC ACATACACAC
  GCACCCACAT ACACATGCAC CCACATGCAC ACGCACGCAC ACACATACAT ACACACGCAC
  CCACACACAC CCACATACAC ATGCACCCAC ATACACATGC ACCCACATGC ACACGCACCC
  R
  CATACACACA TACAACTTGT ACACACATAT GTGTGAGTAC AAATATTTTT TTAAATACCT
  AATGCCTTTA ATCCCAGCCC TCGGTAGGCA GAGGCCAGCA GATCTATGAG TTCAAGGCCA
  GTTTGGGCTA CAGAGTGAGC TCTAGAATAG CCAGAGCTAC ACAGAAAAAC CCTGTCTTGA
  ACAAACAAAC AAAACATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028627	CHEV_3_151978190	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235838672					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			within coordinates
Rr587524	regulatory region 587524			367 bp proximal
Rr587525	regulatory region 587525			585 bp proximal
Rr587526	regulatory region 587526			629 bp proximal
Rr587527	regulatory region 587527			1048 bp proximal
Rr587528	regulatory region 587528			1340 bp proximal