rs235805222 SNP Detail

Summary

• ID
  rs235805222
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6544018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAATGGA AGAAGAGTTT
  CTGTTCCCCA TAAAGGGTAA GATCTGTTTC ATAAAGGATT AGATAGATGC CTGTGCCATT
  GTGCAGGCAG ATATTTAGTT TTTCTTAGAC TCATATGCAA GAAAGTGAAA CAAATTTAAC
  TTAAAATGCT CCAAGGTGGA GAGATCCAAT AGAAATGCCA TTTTTTTCAA ACTGCAAGCC
  W
  GTAGAAAAAG TCAAAATCCT CTCAAAGGGC CAAGCAGCAG GCCTTCCTGG AAAGCCTGCA
  AACTCAGGCC TGCTCCCTCT CGCAAGGAGT GACTTTGAAA TCTTACCATC TCACCCAGAA
  TGATCAAACG CTTGCTCTGC TGTTCCTCAT TCTGTCGTCC AGAATAGAAC TGCTCATGTC
  CTCCACAGAA AATGGCTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320211128	CHEV_2_6460253	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235805222					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6544018 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	487 bp downstream
Rr551417	regulatory region 551417	1360 bp distal
Rr551418	regulatory region 551418	297 bp distal
Rr551419	regulatory region 551419	924 bp proximal