rs235736885 SNP Detail

Summary

• ID
  rs235736885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100977965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAGTTG TTTTTATAAT
  GTTTACACTC CTGGTGAGCT CACAATTATG CAAGGGCCTC TGCATACTCT AAGCCACGGT
  CATGCCTGCA TACAGTTCTG GGTTTGGATG CATGGGTTTT ACGCTATCTA TATGTTGGGG
  CAGGCCTAGT CTGTGTAAAG CACACAGAAG CTCTGGGGCT CCATGCATGC ACTGGAGATG
  Y
  GCACTCATGT CTTTCACAAT GGCACCGGCA CTCTGCAGGA AAACGAGTGG CAGGACCCTT
  AGGATAATCA GGGAGTCTTT CCCACAGTTT AGCCTCTTTA TTTCCCCTCA GTCTCTGGAG
  AACACGTCAC CAACAAATCC CTTCAGTTAC AAAGCCCGTT CCCTCCCAGA GCTTGCCCCT
  GATGTCTGAC AGTGCCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850814	CHEV_3_100874572	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235736885					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100977965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581951	regulatory region 581951			1211 bp distal
Rr581952	regulatory region 581952			within coordinates