rs235704487 SNP Detail

Summary

• ID
  rs235704487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117772577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTGTCC TCGTGCTAGC
  TCGCGCGCCC CCGAACAGGC GACGGAACGG CACACCGCCA GGGGCCCCTG CCTGAAGCAA
  GGACCCGCCT CTATGCACCC TGGGAAATGT AGTTTTCGTC GGACCGGAAG GTGGCTCCTG
  AGGAGGGAGG CTTGGAGCAC GTGGGTTGGG GGTCCTATGG AACCCTATCC TATTCTCGGC
  Y
  TAGGGCAGAG GACCATCTTG CTCAGTCACA TTGCCTAGGA GTGCAACTCT TGCGAAGACG
  TGATTCATGG GGCCTTTGGG TGGAGTTGGA AGCCAAGAAT GGAGGGGAGA GGGTCACGTT
  TGGTCGGCGC TCAGGCACAG GGAACTGGTT GTGTTGGTGA CCATCAGCAC CCGCTAAAGA
  AGAGGAAAGA TAGGAGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362979872	MGP_WTSI_4_117587985	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235704487					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362979872	MGP_WTSI_4_117587985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117772577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	within coordinates
Ipo13	importin 13	381 bp upstream
Rr398419	regulatory region 398419	within coordinates
Rr598257	regulatory region 598257	392 bp distal
Rr598258	regulatory region 598258	413 bp distal
Rr598259	regulatory region 598259	within coordinates
Tssr43010	transcription start site region 43010	668 bp upstream
Tssr43011	transcription start site region 43011	423 bp upstream
Tssr43012	transcription start site region 43012	362 bp upstream
Tssr43013	transcription start site region 43013	326 bp upstream
Tssr43014	transcription start site region 43014	205 bp upstream
Tssr43015	transcription start site region 43015	182 bp upstream