rs235698113 SNP Detail

Summary

• ID
  rs235698113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87129627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTGTGGC ATGTGGCAAA ATGCTGGTCT
  AAGGTGCTCG CACAACAAAT ATCACTGGAA ATCCCGTACA CGTGGAGCTA ATTCCCAGAG
  CTACCCGGAG ATGGAGAAGC AGAGCTGGGT GAAACTGTAT CCCAGCCTGT GGTTATCTAC
  Y
  GGATAAGCAT GTGTACTCTT TCCTAGAGCT TTTAAATTCT TCCTTCCCCT TCCAGCACAA
  CTCTCTCTTA TCCTGTTCTA TTTATTTCTG TAAGTGTATG AGACTTGCAG AGCATTAACA
  CATCAAAACA TATGTTCCCT AAGCCCGTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321200592	CHEV_4_86857294	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235698113					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87129627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594869	regulatory region 594869			432 bp distal
Rr594870	regulatory region 594870			within coordinates
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant