rs235667323 SNP Detail

Summary

• ID
  rs235667323
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88787180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTAACT ACACTGTGGA
  AGGGAGCCCA AGGAACTAAG AGCAAGGCTG CAGAGGAAAG TATCATGTTT GACTGATAAA
  CGAATTCTTC TTAAATATCA TATCCCATTG TTTTTTTGGT TTGTTTGTTT GTTTGTTTGT
  TTGTTTTTCC GAGATAGGGT TTCTCTGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCCT
  M
  GCACTCAGAA ATCCGCCTGC CTCTGCCTCC CCCACGCCCG GCTAGCCCAT TGATTTTTTA
  ATTGGATATT TTCTTTATTT ACATTTCAAA TGTTTTCCTC TTTCCAGGTC TCCCCTTCGG
  AAACCCCCAT CCCATCCACC CTCCCCCTGC CTCTATGAGG GTGCTCTCCC ACCCACCCAC
  TCACTCCTGC CTTCCCGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362333939	MGP_WTSI_4_88514847	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	A	A	A	A	C	A	C	A	A	A	C	A	C	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235667323					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	A	A	A	A	C	A	C	A	A	A	C	A	C	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362333939	MGP_WTSI_4_88514847	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88787180 () rs orientation: forward

Symbol	Name	Function Class
4930553M12Rik	RIKEN cDNA 4930553M12 gene	563 bp upstream
Cpgi14432	CpG island 14432	493 bp distal
Gm69755	predicted gene, 69755	89 bp downstream
Rr398331	regulatory region 398331	1417 bp downstream
Rr595126	regulatory region 595126	574 bp distal
Rr595127	regulatory region 595127	1384 bp distal
Rr595128	regulatory region 595128	487 bp distal
Rr595129	regulatory region 595129	134 bp distal
Tssr37771	transcription start site region 37771	443 bp downstream