rs235652607 SNP Detail

Summary

• ID
  rs235652607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115015437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTAAGAT GAAAGCATGA
  ACTACCTCAT TCACAACCTT GTGGAGCTAT CACCTCTAGT GCCAAGTTGT AGGAGCATTT
  GAAGATTTAG AAAAACAAAA GAAATGTAAA ACATGCCGGC CCAGGGGATT GTGATTGCTA
  GAAACTGACT GTGGTTTCTT CATGTTAAAG GTCTTTTTCA AGTCTGATAA TAAATAAATG
  Y
  TCCATAAAAG GAAACATATT GTATAAATAT TCCCTCACAT TTGCATTCAA TTTTAGAGTC
  AGAGAAGTCT TCTTGCCCCT TCAGGGATGG TGTCTTAGTC AGGGTTTCTA TTCCTGCACA
  AACATCATGA CCAAGAAGCA AGTTGGGGAG GAAAGGGTTT ATTCAGCTTA CATTTCCACA
  TTGCTGCTCA TCACCAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915086	CHEV_6_114988494	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235652607					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115015437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17868	CpG island 17868	431 bp distal
Gm68165	predicted gene, 68165	602 bp downstream
Rr399845	regulatory region 399845	376 bp downstream
Rr636913	regulatory region 636913	296 bp distal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog	600 bp upstream
Tssr62499	transcription start site region 62499	595 bp upstream
Tssr62500	transcription start site region 62500	714 bp downstream