rs235612774 SNP Detail

Summary

• ID
  rs235612774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATCCCT TGGTTTCCGA
  GAGTTGCTCA GCAGTGTTTG TGGCGCGAAG ATTCCCACCG CCGACCCCTG TCATGATTAA
  AGGAGGCTGG CTGTAGGATT CAACACGGGA AAGCCAGTCG TGGAAGGGAG AGGGGGCTGT
  CTCGACCACT GGCCTCCGGG TCGATAGAGA ACTTTTCTTT TTTGTCAATT GCCAGGGGCC
  R
  ACTGCGGAGC CTTTGCCCTT CTCGAGAGTT CATCCTTTGA CATACATGGA CAGCAGGTTG
  TGTGAGAGTA GTTTTATTCA TAAGCATGCC GCCAGCATTC ATTCAATGAC GTTAGAAAAA
  AAGAGAGAAA TAAAATAAAA TAAAAAGGAG AAACGGGAAG TAAACTAGTG TTTGTCATGC
  TCCAAATTCA CTTCATGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646621	CHEV_14_60060302	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235612774					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cab39l	calcium binding protein 39-like			Intron
				Noncoding-Transcript-Variant
Cpgi6560	CpG island 6560			134 bp distal
Gm45935	predicted gene, 45935			585 bp upstream
Rr404137	regulatory region 404137			407 bp downstream
Rr493049	regulatory region 493049			601 bp distal
Rr493050	regulatory region 493050			474 bp distal
Rr493051	regulatory region 493051			within coordinates
Setdb2	SET domain, bifurcated 2			585 bp upstream
Tssr125903	transcription start site region 125903			883 bp downstream
Tssr125904	transcription start site region 125904			469 bp downstream
Tssr129008	transcription start site region 129008			578 bp upstream
Tssr129009	transcription start site region 129009			368 bp upstream
Tssr129010	transcription start site region 129010			357 bp upstream
Tssr129011	transcription start site region 129011			158 bp upstream
Tssr129012	transcription start site region 129012			155 bp upstream
Tssr129013	transcription start site region 129013			148 bp upstream