rs235590925 SNP Detail

Summary

• ID
  rs235590925
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167032574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGGCAG GTGGCAATTT
  TAAATAGCCC TTGCTTTGAT TCCATTCCAG ATTCTACAAA ATCAAATTCT AGATTCTGGA
  GGAAGGTGGA TATTACACCA ATTAACAAAC CAACAGGCAA AAGAGGTGGG CAGCTGGGTG
  GTAGCTGTTG AGGAGAAACA TAAGGCCAGG TGAAGGGCCA GGGAAGACTC AGAGTTTGCC
  K
  GGCCTTGTTA GTCACTCACC CATGGGTGCT AACTTGGACA GCTGCTTCTA GACTGCCGAG
  GGTCGAGGCT CAACCGAGAG ATCCACTGGC CCTGCCTCAC CCTGTGCGGT GGGGCCGGCA
  GGTTCCGGAG TGACTGTAGG CAGGGTTGCA TGCAGAAGGG GTCAGGTATC CCTCTGTCAG
  CCACACTTGG GCTCGGCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356500179	MGP_WTSI_2_167016154	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235590925					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356500179	MGP_WTSI_2_167016154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167032574 () rs orientation: forward

Symbol	Name	Function Class
1110018N20Rik	RIKEN cDNA 1110018N20 gene	within coordinates
Cpgi12734	CpG island 12734	within coordinates
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1	499 bp upstream
Ptgis	prostaglandin I2 (prostacyclin) synthase	1151 bp downstream
Rr570486	regulatory region 570486	1942 bp distal
Rr570487	regulatory region 570487	1019 bp distal
Rr570488	regulatory region 570488	510 bp distal
Rr570489	regulatory region 570489	173 bp distal
Rr570490	regulatory region 570490	180 bp distal
Tssr21792	transcription start site region 21792	978 bp downstream
Tssr21793	transcription start site region 21793	961 bp downstream
Tssr27749	transcription start site region 27749	1881 bp upstream
Tssr27750	transcription start site region 27750	1839 bp upstream
Tssr27751	transcription start site region 27751	1818 bp upstream
Tssr27752	transcription start site region 27752	546 bp upstream
Tssr27753	transcription start site region 27753	481 bp upstream
Tssr27754	transcription start site region 27754	342 bp upstream