rs235527495 SNP Detail

Summary

• ID
  rs235527495
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84566999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTGTAC CCAGAGGCCG
  CGGGAGTCCT GTACACATGT TCTCAGATAT GTGTGAATAA GTAAACATGC CACTGAGCGC
  GACCACCTTC TCAGAGCTAG CCACGGAGAG TCCAGAGCCC CATCCTATGT GGGGTGTGAT
  TGTGGCACCT GCATGTGCTC TCACCAGACG CTGGTGGAGA GAACTTGAGT TTGAGAGTCT
  M
  TCCATAACCG TATGTGTCTG CGCATCCATG GATCTGCCTG TTATATGGCC TCTCCTGAGA
  GCCCGGGACG GAGCTGCACA CAGCGGCCCC AGTATTTGCA TGAGTAGCGC GTAGCTCTCC
  CTGTCCGTTG CCTCTGGTTT TCCCCAGACG TCTAGTCTTC TTGTTCCACT CCCACACTCC
  CGGAGCAAAT ACTAGTAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369055504	MGP_WTSI_6_84540011	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235527495					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369055504	MGP_WTSI_6_84540011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84566999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17628	CpG island 17628			544 bp distal
Cpgi17629	CpG island 17629			within coordinates
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1			Intron
				mRNA-UTR
Rr633074	regulatory region 633074			1522 bp distal
Rr633075	regulatory region 633075			889 bp distal
Rr633076	regulatory region 633076			112 bp proximal
Rr633077	regulatory region 633077			220 bp proximal
Rr633078	regulatory region 633078			966 bp proximal
Tssr61724	transcription start site region 61724			1698 bp upstream
Tssr61725	transcription start site region 61725			1408 bp upstream
Tssr61726	transcription start site region 61726			1372 bp upstream
Tssr61727	transcription start site region 61727			1330 bp upstream
Tssr61728	transcription start site region 61728			1311 bp upstream
Tssr61729	transcription start site region 61729			1034 bp upstream