rs235523142 SNP Detail

Summary

• ID
  rs235523142
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70296358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGACCC TAGGACTAAG
  GACACTGAAG TCAACACGAC AGACCCAGGC TCTGCCATCA TGAGAACAAA GCAACTGGCA
  GTGTAACCCT GCGCCTGTCC TTAGACGGCA CAGCACAGGG ATAAGAAGCA GAGCGGTGAC
  TGTCAGATTC GACACTGTCA AGAAGGACCA AGGGGATTCC ATGACATGGG GACAGGAATG
  T
  CGAAATTACT GAAAAACGTG AAAAATGAGA AATGCACACT GCAGGACCTG GAATATGGCG
  AGAAAACTGA ACATCACGGA AAATGAGAAT AACACTCTTT AGGTAGTGAA ATATGACGAG
  AAATATTGAA AAATAAGCAC TAGGAGCAGC CTGAGCTGCT TGCTTCACTG TCAGACAGGA
  GCTCAAGAAG TCTATGTATC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	DBA/2J	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	SM/J
ss361900152	MGP_WTSI_4_70039155	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	DBA/2J	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	SM/J
rs235523142					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361900152	MGP_WTSI_4_70039155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70296358 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	469 bp distal
Rr593866	regulatory region 593866	566 bp distal
Tssr37622	transcription start site region 37622	within coordinates
Tssr37623	transcription start site region 37623	21 bp upstream
Tssr37624	transcription start site region 37624	54 bp upstream
Tssr37625	transcription start site region 37625	98 bp upstream
Tssr42116	transcription start site region 42116	54 bp downstream
Tssr42117	transcription start site region 42117	86 bp downstream
Tssr42118	transcription start site region 42118	98 bp downstream