rs235509331 SNP Detail

Summary

• ID
  rs235509331
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5498808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGATAC AATACGTAGG
  TTTCATATAG AAAGTCCCAT TTTCTCAAGC CTATTGTGTG CTCAGCAATA CCTTATGGTG
  TTGTGTGGTG ACTAAGGATC AGGTGGTGTC ATATGATGCT CACAGAAATG ACTAAAGGTT
  AAGTGTGAAC CGAGGTCACC AAAATTTTGT TGCCGAGTTA TCCTGTCCAA TAATATTTAC
  W
  GCGTTGCTCT CAACACACGG CATTCCTCTA TGCCATTTCT GGGTGATGGT GGCTGTTGTT
  GTTACTGGCA GCACTGATGG TAGCTAAGCC GCAATGACCA GGTCAGGTTT TCTTTTTACC
  TAGTTGGCAA ATGTTCCATG TGGCACCGTG ACTAGAGAAT GGCCTGGGAT CTCTATCCTC
  AGACGGGTCA CACATCCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729298	CHEV_6_5448808	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235509331					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5498808 () rs orientation: forward

Symbol	Name	Function Class
Rr378865	regulatory region 378865	1307 bp downstream
Rr626153	regulatory region 626153	within coordinates